yebC [2019-06-07 09:09:37]

unknown

locus: BSU06380

pI: 9.57

mw: 30.47 kDa

protein length: 267 aa

gene length: 804 bp

function: unknown

product: unknown

essential: no

synonyms

Genomic Context

categories

• [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.2|Cell envelope stress proteins (controlled by SigM, V, W, X, Y)]
• [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

Gene

Coordinates: 696,195 → 696,998

The protein

[SW|Localization]

• cell membrane (according to Swiss-Prot)

Expression and Regulation

Operons

• genes: [gene|F4D5BD29C034D22F6F44DA0A0C0A778441F8BDD2|yebC]
  description: [Pubmed|21815947]

  sigma factors

  • [protein|081DF3EE9FA56209D648C7677188C61CE3AA8E41|SigM]: sigma factor, [Pubmed|18179421], in [regulon|081DF3EE9FA56209D648C7677188C61CE3AA8E41|SigM regulon]
  • [protein|D04629D798E458AD538809BB2B150B7FA81D2C7E|SigV]: sigma factor, in [regulon|D04629D798E458AD538809BB2B150B7FA81D2C7E|SigV regulon]

  regulation

  • expression is reduced in a [protein|D04629D798E458AD538809BB2B150B7FA81D2C7E|SigV] mutant [Pubmed|21926231]

  additional information

  • the mRNA is substantially stabilized upon depletion of [gene|872CCB5A49C9000BD95E4B0472556D5F60F7D7A4|RNase Y] [PubMed|21815947]

Biological materials

Mutant

• MGNA-A919 (yebC::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/919 NBRP B. subtilis, Japan]
• BKE06380 (Δ[gene|F4D5BD29C034D22F6F44DA0A0C0A778441F8BDD2|yebC]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE06380 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTCAGCAACTCCTATCA, downstream forward: _UP4_TAATGAAAAAACCGGCTAAT
• BKK06380 (Δ[gene|F4D5BD29C034D22F6F44DA0A0C0A778441F8BDD2|yebC]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK06380 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTCAGCAACTCCTATCA, downstream forward: _UP4_TAATGAAAAAACCGGCTAAT

References

• 21926231,21815947